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Total RNA extraction and complementary DNA (cDNA) synthesis were then performed8; polymerase chain reaction (PCR) amplification was done using 2?��L of cDNA, LDLr primer (No. Hs01092525_m1, Applied Biosystems, Waltham, MA, USA). Next, PCR was performed for one cycle of 10?minutes at 95��C followed by 40 cycles of 15?seconds at 95��C and 60?seconds at 60��C. For the internal control, ��-actin (No. 4326315E, Applied Biosystems) transcript levels were used. Quantitation of mRNA fold changes was made using the comparative CT (2?����Ct) cycle (��Ct) method.9 2.4. Western blotting assays Cell lysates were prepared in radioimmunoprecipitation assay buffer (Pierce, Rockford, IL, USA), containing protease inhibitors (complete, without EDTA; Roche Diagnostics, Penzberg, Germany). Equal amounts of protein (30?40?��g/lane) were electrophoresed on 4?12% sodium dodecyl sulfate�Cpolyacrylamide gel and transferred onto nitrocellulose membranes. Vismodegib ic50 Each membrane was incubated with the aforementioned primary antibodies. Blots were developed with a 1:1,000 dilution of the horseradish peroxidase-conjugated secondary antibody Trichostatin A chemical structure (Cell Signaling). Proteins were visualized using the Immobilon Western HRP Reagent (Millipore, Billerica, MA, USA). A representative experiment of three independent experiments is shown in each figure. 2.5. Measurement of total cholesterol levels in?vitro Cells were cultured in a 6-well plate and incubated overnight in medium containing 10% FBS. Cells were then incubated in a culture medium containing various concentrations of simvastatin. After 72?hours, the medium was aspirated, and cells were washed with PBS. Cholesterol was extracted with hexane:isopropanol (3:2, v/v), and the solution was transferred to glass tubes for drying by evaporation. Once the tube was dried, 200?��L of 50mM Tris containing 0.1% Triton X-100 and 10mM sodium cholate was added to the tube, and cholesterol concentrations were measured enzymatically Casein kinase 2 (Wako, Osaka, Japan). In addition, a solution of 0.1% sodium dodecyl sulfate plus 0.1N NaOH was applied to the wells and the protein concentration was measured using a DC protein assay (Bio-Rad). The total cholesterol level was calculated by dividing the result by the total protein concentration. 2.6. Small interfering RNA Cells were transfected with ON-TARGETplus Nontargeting Pool (No. D-001810-10-05, Dharmacon, Waltham, MA, USA) and ON-TARGETplus LDLr small interfering RNA (siRNA; No. L-011073-00-0005, Dharmacon) using DharmaFect (Dharmacon). After transfection, the cells were incubated for 48?hours at 37��C in a 5% CO2 atmosphere. 2.7. Statistical analysis All data are expressed as means?��?standard deviation unless otherwise indicated. Differences between values were evaluated by one-way analysis of variance with Tukey post hoc test. In all analyses, P?

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