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Cytokines were measured by the Q-Plex? mouse inflammation cytokine array (Biolegend, San Diego, CA, USA). Paraffin-embedded, ethanol-fixed tissue sections were studied for the presence of apoptotic cells (TUNEL assay; Roche Applied Science, Indianapolis, IN, USA; Fig.?1E), tissue eosinophils (anti-mouse major basic protein [MBP] antibody provided by Dr. Jamie Lee; Mayo Clinic, Scottsdale, AZ; Figs?1E and 4E), and FasL expression (polyclonal anti-FasL N20 antibody, Fig.?2C/a�Cd, or irrelevant PFI-2 rabbit IgG, Santa Cruz Biotechnology, Santa Cruz, CA, USA; Fig.?2C/g). FasL expression by BAL cells was studied by immunocytochemistry in acetone/methanol-fixed cytospins using N20 labeling (Fig.?2B) and by indirect immunofluorescence flupentixol in live cells using biotinylated anti-FasL MFL4 and MFL3 clones (not shown). The specificity of lung FasL staining was confirmed in OCT-embedded (Tissue-Tek?; Fisher Scientific, Pittsburgh, PA, USA), snap-frozen blocks of lung tissue processed as previously described [17] and labeled with anti-FasL MFL3 (not shown) or MFL4 (Fig.?2C/f). TUNEL+ cells were individually quantitated (NIS-elements? image analysis software, Nikon Inc., Melville, NY, USA) by blinded observers. The density threshold was set to trace all positive cells within the subadjacent peribronchial tissue for a given length of airway. TUNEL results were corroborated with a PE-conjugated activated caspase 3 antibody (BD Pharmingen, San Jose, CA, USA; data not shown). Peribronchial MPB+ eosinophils were assessed the same way (Fig. 4E/b), but because PI3K inhibitor eosinophils were occasionally crowded and touching in areas of intense inflammation and border-finding algorithms for individual cells failed there, we divided the total cellular MPB+ area for a given peribronchiolar region by the average area of a single eosinophil (53?��M2; a constant obtained through direct measurement of 20 individual, well-defined cells). It should be noted that the MBP+ area analyzed was always overtly cellular by direct inspection and not related to extracellular deposition. Tiny (

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